MICROM 442 Midterm II
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286 terms
Terms | Definitions |
|---|---|
H. influenzae is a primary pathogen for? | pediatric, 6 to 18 months of age |
Feature of H flu that makes it virulent? | type b capsule (PRP) |
Main source of vaccine? | protein linked PRP conjugate |
Type B H. flu causes which diseases? | meningitis at 2 years or younger, epiglottitis and pneumonia 2-5 years |
capsule helps against immune system how? | antiphagocytic |
failed vaccine was conjugated with? | carbohydrate |
non-typable H. flu causes? | otitis media |
route of spread for meningitis? | respiratory tract -> bacteremia -> CNS |
epiglottitis symptoms? | rapid progression within 24 hourssore throat fever barking cough |
otitis media and sinusitis source of infection | displacement from normal microbiota |
cellulitis and sinusitis source of infection | respiratory tract infection |
requirements of h. flu diagonsis | requires x factor (hematin)requires v factor (NAD) growth on CA |
difference between h. influenzae and h. parainfluenzae? | h. para does not require X, biology similar to non-encapsulated h. influenzae |
shape of haemophilus? | gram negative coccobacilli |
common diseases for h. ducreyii? | venereal disease in developing worldenhances HIV transmission |
symptoms of h. d? | chancroid with satellite lesions |
diagnosis of h. d | gram stain, culture on chocolate and vancoymcin (33 degrees, 5% CO2) rule out syphilis with dark field stop serology |
Bordatella pertussis site of infection | ciliated respiratory epithelium that lines the airways |
how does B. pertussis spread? | aerosolized droplets |
BP uses what for attachment | FHA and pili |
toxins of BP? | TCT (tracheal cytotoxin) PG-fragment that destroys ciliated cells via NO and IL-1PT: AB toxin, ADP-ribosylates G-protein, increased cAMP creates lymphocytosis ACT: catalyzes ATP to cAMP, acts as hemolysin |
what controls BP toxins? | Bvg, two component regulatory system |
Clinical manifestations of BP? | whooping cough/pertussis |
whooping cough characteristics | 95% attack rate for unimmunizedasymptomatic carriage cause of persistent cough |
BP vaccine part of which vaccine? | DTaP |
complications from BP infection? | pneumoniadehydration malnourishment brain damage |
BP symptoms caused by what other Bordatella? | B. parapertussis |
diagnosis of BP? | lymphocytosisculture on selective media DFA PCR |
growth characteristic of Bordatella? | fastidious |
Other Bordetella? | bronchiseptica: kennel cough, sepsishinzii: HIV patient blood, ascending cholangitis holmesii: cultured from blood of patients with significant medical problems |
Mycoplasma pneumonia characteristics | smallest free-living bacteriapleomorphic filaments no cell wall sterol cell membrane strict aerobe no alternative sigma factors "austere genome" terminal organelle |
MP causes | respiratory tract infections: tracheobronchitis, pneumonia, "walking pneumoniae" |
MP causes disease in which age group? | children and adolescents |
MP attachment via? | adhesin protein P1 |
MP diagnosis? | PCR |
how does LP facilitate phagocytosis? | porin molecule binds C3 |
Type IV secretion used for? | altered phagosome, delays phagolysosomal fusion, resembles autophagy |
LP life in macrophage? | nutrient acquisition from macrophage until bacteria starves, kills mac and moves on |
clinical manifestation of LP | Legionaires disease: headache, myalgia, rising fever, dry cough, necrotizing pneumoniae, |
different serogroups of LP | epidemic (group 1)nosocomial (group 6) |
other clinical manifestations of LP? | Pontiac fever |
other Legionella? | micdadei |
LP diagonsis? | DFA, carbol fuchisinculture with BCYE pH<7.0 |
General characteristics of Neisseria? | GNDCrequire enrich medium and CO2 oxidase positive differentiate via sugar utilization |
host range of Neisseria | obligate human pathogens |
structure/antigengs of GC | gram negative cell wallPor/Opa LOS pili |
Pili host receptors | CD46 of male urogenital epithelial cellsCR3 of female cervical epithelium |
Variation of pili | phase variationsequence variation antigenic variations |
Antigenic variation of pili | 6 different immunodominant variability regionspilS (silent genes) pilE (active gene) pilin variation via recombination transformation or intrachromosomal 10e6 different variants of pilin |
Outer membrane proteins of GC? | Por (OMP I) and Opa (OMP II) |
Por characteristics | 50-60% of total proteinmost abundant structural surface protein trimers for aqueous channels for porin function involved with attachment and invasion of host (binds to CR3) |
Por antigenic variations | one antigenic type, with some variation1A = disseminated, 1B = genital infections |
Opa characteristics | ~12 genes (3-4 in MC)0-3 genes may be expressed functions in close attachment to host cells |
What determines colony morphology of GC? | Opa |
What does Opa bind to? | cell surface proteoglycansextracellular matrix proteins |
Variation in opa | phase and antigenicmay relate to microenvironment |
Cervical isolates of Opa are? | positive for Opa |
Elsewhere in GU Opa is | negative |
Phase variation of OPA | separate promotersconstitutively transcribed translationlly controlled |
Phase variation of OPA is controlled by? | CTCTT repeats that change frameeven number of repeats = in frame? |
Antigenic variation of Opa | 12 opa genesrecombination inf hypervariable region |
Lipooligosaccharide (LOS) general characteristics | similar to LPS of enterics, but lacks repeating subunitsmaybe sialyated in vivo |
LOS aid in pathogenicity | production of inflammatory mediatorsattachment to some host cells serum resistant if sialyated |
male vs. female pathogenesis | acute in malesasymptomatic in females |
cases of pathogenesis in males | pili attachment to GU tract (CD46) cannot internalizeOpa leads to closer adhesion to host cells leading to internalization |
GC pathogenesis in males: invasion | enter and multiply within epithelial cells, which reach the mucosatriggers inflammatory response leads to hematogenous |
GC pathogenesis in females | Pili and Por bind to CR3 of cervical epitheliumiC3b deposits on LOS, binds to CR3 internalization does not trigger inflammatory response |
Natural immunity to GC caused by? | colonization with commensal Neisseria and otherskilling by NHS and complement |
Immune response to GC | IgM and IgG and IgA against Por and LosOpsonic antibodies against pili and Opa GC phagocytosed by neutrophils (fate?) |
Evasion of immune response by GC | antigenic/phase variationsialyation of LOS IgA protease |
Clinical manifestation | UrethritisCervicitis Salpingitis Dissemination |
Asympytomatic percentage of carriers of GC | 40% males80% females |
GC Urethritis in males | 1-14 day incubation Dysuria/urethral discharge edema and erythema spontaneous resolution without therapy |
complications of urethritis | epididymitisprostatis |
GC GU infections in females | dysuriadischarge instramenstrual bleeding inflammation of fallopian tube |
Disseminated gonorrhea | leads to lesions arithritis dermatitis 0.5-3% untreated patients |
Dx GC | culture via TM mediaGram stain for intracellular GNDC PCR |
Treatment of GC | cephalosporins, quinolonesrise of penicillin resistance |
MC general characteristics | same as GC (has capsule)genetic islands that separate it out |
major antigens of MC | CPS, LOS, pili, OMPs |
What determines serological groups of MC? | Capsule (ABCWY cause most serious disease) |
Target of vaccines | CPS |
Pathogenesis of MC | attachment via pili to oropharynxextracellular pathogen disseminated from pharynx via blood stream, cross blood brain barrier at choroid plexus (vasculated portion of BBB) |
Evasion of immune response | IgA protease for intracellular survival and IgA inactivation |
Immunity via? | presence of bactericidal antibodies against Por Opc and LOSopsonic antibodies during carriage of N. lactamica and other cross-reactive species |
Susceptibility via? | Lack of active complementLOS induces TNF and IL = shock, hemorrhages, meningitis |
Manifestations of MC if entered blood | meningitis (30-40%)meningococcemia (10-30%) first 2 combined (30-40) fulminant meningoccemia (10-20%) (DEAD IN A DAY!) |
causes of fulminant meningococcemia | lack of complement, opsonization, bacteridicidal antibodies |
Clinical manifestations | asymptomatic carriage (usually transient)meningitis (can occur without signs of sepsis) meningococcemia fulminent MC (inflammatory response to LOS) |
MC Dx | CSF gram stainDX latex agglutination (CPS) PCR |
Treatment of MC | Pen G with (children + steroid theapy)cephaosporins |
lysis of MC good or bad? | bad, leads to inflammation |
Review the differential characteristics between pathogenic spirochetes | ... |
Spriochetes include | Treponema, Leptospira, Borrelia |
cell wall structure of spirochetes | ... |
what is the working definition of an anaerobe? | fails to grow on the surface of a solid medium in air containing 5-10% CO2 |
How is oxygen toxic to anaerobes? | Can be converted to H2O2Lack catalase and SOD Reduced activity for some enzymes |
How is one predisposed to anaerobe pathogenesis? | surgery (bowel)vascular disease impaired host defense prolonged antibiotic therapy chronic disease mixed wound infection |
Virulence factors associated with anaerobes | antibiotic resistance (Bacteroides)Exotoxins/Exoenzymes (neurotoxins from C. tet and C. bot) Degradative enzymes (lecithinase from C. perf) |
Diagnostic associations of anaerobes | Putrid colorTransport filled with CO2 or N2 Gram stain (spore formers) Fastidious Anaerobic culturing |
Treatment of anaerobes | Drainage/debridement of necrotic tissueCombination of Abx |
How to prevent anaerobe infection | avoid reduction of redox potentialprevent movement of normal flora to non-desired places prophylactic antibiotics after certain surgeries/procedures |
Sporeforming anaerobes that cause disease | Clostridum:tetani, botulinum, perfringens, septicum, novyi, histolyticum, difficile |
Which Clostridia cause myonecrosis? | perfringens, septicum, novyi, histolyticum |
Clostridum general characteristics | anaerobic, gram positive spore forming, strict anaerobes |
Natural reservoir for clos? | soil, GI tract of humans and other animals |
Etiology of Clostridial wound infections | mixed infection following surgery or trauma |
Common pathogens with Clostridial wound infections | perfrigens (A), septicum, novyi, histolyticum |
How can a wound infection manifest? | superficial wound contaminationanaerobic cellulitis/crepitus(gas) gas gangrene |
Main source of pathogenesis of clostridial wound infections? | toxinsalpha toxin (phospholipase or lecithinase C) theta toxin (perfringolysin) pore forming others |
Host defenses present? | None. |
Dx of Clostridial wound infections | gas in tissues (could be other bacteria)typical lesions |
Lab cultures to verify Clostridial Dx? | many, plump gram positive bacilli anaerobic growth double zone of hemolysis lecithinase activity nagler reaction |
Treatment/Prevention of Clostridial WI? | debridement/cleansingpenicillin hyperbaric O2/antitoxin (controversial) |
Main cause of anaerobic food poisoning? | Clostridium perfringens |
Source of C. perf? | Meat products |
How many cells required for C. perf infection? | 10E6 - 10E7 cells/gm |
Virulence factors associated with C. perf? | spore germinationproduce enterotoxin when in small intestine during sporulation |
Effect of C. perf enterotoxin? | pores in enterocytes |
Dx of C. perf | 7-22 hours post ingestiondiarrhea, cramps, ab pain verify via spores |
Treatment of C. perf? | supportive therapy, has low mortality rate |
Source of C. bot spores? | soil, silt, vegetation |
Types of foods incriminated in C. bot poisoning? | home canned foodspreserved fish prepared meats uncooked |
Symptoms of botulism | 12-96 hour incubation periodflaccid paralysis |
Action of botulinum toxin | absorbed in intestinetransported to neuromuscular junctions via blood stream block neurotransmitter secretion paralysis leading to respiratory failure and death |
host defenses against BT | immunity per typedoes not induce protective immunity |
Dx of BT | vomitting, constipationparalysis of motor nerves |
Lab Dx of BT | IsolationDemonstration of toxin CSF to rule out others |
Treatment/Control of BT | suspicion will initiate therapyeliminate unabsorbed toxin: lavage/enemas eliminate source neutralize unbound supportive care (respiratory) antitoxin therapy antibiotics for wound and infantile |
Movement of tetanus toxin | Move along nerve fibers |
High risk population for tetanus? | Elderly, 50% mortality for older than 60 years |
Action of tetanus toxin? | Blocks secretion of inhibitory neurotransmitters |
Clinical Dx of tet? | clinical manifestationscramping and twitching of muscles around wound early diagnosis is critical |
Lab Dx of tet? | isolation of organismspores = presumptive demonstration of toxin |
Immunity against tetanus | antitoxintoxoid immunization recovery does not grant immunity |
Treatment of tetatnus | antibioticsairway maintenance GABA agonists tetanus immune globulin |
Structure of tetanus and botulinum toxins | 150 kDa that is released via cell autolysisThree domains: Hc (neurospecific binding), Hn (membrane translocation), L (catalytic activity) |
Processing of TT and BT | proteolysis cleaves L chain off, reduction reduces sulfur bridge, release light unit that is transported to neuron |
Catalytic effects of TT and BT | Cleaves membrane protein that prevents fusion with cell membrane |
Site of TT | VAMP |
Site of BT | GBDF = VAMPC = Syntaxin AE = SNAP25 |
Pseudomembraenous colitis is associated with? | Clostridium difficile |
Two principal toxins | exotoxins TcdA and TcdB (45% homology at AA) |
Domains of TcdAB? | receptor bindingmembrane translocation glucosyl transferase activity |
Catalytic activity of TcdAB? | inactivate Rho proteins via glucose transfer |
Pathology of C. dif | colonsevere abdominal pain: watery diarrhea, mucus, blood pseudomembrane 27-44% mortality rate |
Dx of C. dif | pseudomembraneisolate from stool, test for toxin assay for toxin |
Host defense to C. dif | unknown, toxin is decent Ag |
Treatment of C. dif | Vancomycin and metronidazole |
epidemiology of C. dif | healthcare associatedvirulent strain isolated with mutation in regulatory gene, (16 to 24x more AB toxin) resistant to fluoroquinolones |
Nonsporeforming anaerobic disease agents | BacteroidesPrevotella Fusobacterium |
General characteristics of NSF anaerobes | 1/3 of anaerobic clinical isolatesnormal flora on mucosal surfaces extracellular parasites |
most common organism in GI tract? | Bacteroides fragilis |
What is a common between the NSF anaerobes? | Generally oxygen tolerant |
Where is B. frag found? | GI, vagina, cervix |
Where does B. frag cause disease? | lower half of body |
Is B. frag bile resistant? | yes |
What diseases does B. frag cause? | intra-abdominal abscessesskin and soft tissue infections mild diarrhea |
What virulence factors does B. frag have? | CPSexoenzymes: SOD, peroxidase, ECMases endotoxin pili penR |
Dx of BF | abscessesgram stain and culture |
Tx of BF | antibioticsdrainage of abscess |
General characteristics of Prevotella melaninogenica | part of oral microbiotaalso found on external genitalia black pigment on blood agar |
Dx of PM | periodontal diseaseaspiration pneumonia lung abscesses chronic sinusitis otitis |
Virulence factors of PM | capsuleextracellular enzymes: phospholipase A |
Dx of PM | Gram stain and culture |
Tx of PM | antibiotics (penicillin, metronidazole) |
Characteristics of Fusobacterium necrophorum and nucleatum | thin rods with pointed endsnormal microbiota of oral cavity infect upper half of body necrophorum has lipase and leukocidal toxin |
Characteristics of Actinomyces israelii | gram-positive anaerobic rodbranching, filamentous, no spores slow growing |
CM of AI | cervicofacial infections via poor hygiene and disruption of mucosal barrier or aspirationactinomycosis |
Dx of AI | sulfur granule like colony on pusculture biochemical tests |
Tx of I | high doses of penicillin with long term therapy |
What defines a biofilm infection? | associated with some sort of surfacebacteria live in matrix encased groups or colonies infection is confined to a particular location infection is resistant in vivo despite antibiotic sensitive |
What are common themes for most bacterial pathogens? | Adhere to hostEvade host immune system Establish colonization and reproduce |
What are the common themes in Salmonella and Yersinia pathogenesis? | Gram negative facultative anaerobic rodesCause systemic and GI diseases Utilize T3SS encoded on pathogenicity islands Adhere to M-cells of peyer's patches |
Host range of Salmonella? | wide range of vertebrate hosts |
What type of pathogen is salmonella? | facultative intracellular pathogen that can resides in mononuclear phagocytes |
What are the mechanisms of salmonella host adaptation? | Many, but poorly understood |
Cell shape for Salmonella | Gram-negative rod with peritrichous flagellae |
Does Salmonella ferment lactose? | No |
What other indication of Salmonella? | H2S formation |
What types of media used to select/isolate Salmonella? | SS, Hektoen, XLT, Mac |
Serology of Salmonella? | O antigen from LPS, H antigen from flagella, Vi-antigen: polysaccharide capsule |
Clinical manifestations of non typhoid Salmonella | fever, ab cramps, diarrhea (sometimes bloody), localized sepsis, global sepsis |
How is non-typhoid Salmonella spread? | ingestion of contaminated food, water, or contact with infected animals |
What causes salmenoellosis? | 50% either Typhimurium or Enteritidis, Newport next prevalent |
Clinical manifestations of Typhoidal Salmonella? | fever, headache, constipation, malaise, chills, myalgia, confusions, delirium, intestinal perforation, death |
Where can etiologal agent of typhoid be isolated from? | blood stream, marrow, stool, urine |
What causes typhoid? | Salmonella enterica serogroup Typhi |
Clincal features of Typhi | 10-14 day incubationfound in stool 2nd week on carriers |
Where can Typhi reside? | gallbladder |
Which SPI encodes Vi antigen | SPI7 |
Vaccines exist? | Yes, Ty21, live attenuated |
Main differences between Typhi and Typhimurium? | Typhi is host adaptedTyphi causes systemic infection with little diarrhea Typhi has a vaccine Typhi can evoke carrier state |
Route of infection for Salmonella | oral ingestion (smaller dose required if food is buffered)travel to distal ileum where uptake is mediated by M-cells and CD18+ Invade M-cells and CD18 via SPI-1 Ruffling up epithelial cells facilitates uptake Encounter phagocytic cells in lamina propria, survival mediated by SPI-2 |
What does SPI-1 secrete? | SipA and SipC that mediate actin rearrangement, inducing uptake, not required for systemic invasion |
What does SPI-2 do? | prevent assembly of NADPH oxidase on SCVs, allowing systemic infection |
SPI-3 does? | magnesium transport required for macrophage growth |
Spi 4 is for? | survival in macrophages |
SPI-5 encodes what? | Pips, required for enterititis and possible neutrophil attraction |
SPI-7 encodes? | Vi antigenplasmid can be lost in vitro, found in all clinical isolates |
Yersinia virulence factors? | InvasinYops Yersinabactin |
What does invasin do? | facilitate uptake by host cells |
What does YopE do? | depolymerizes actin |
What does YopO do? | phosphorylates host proteins-disrupts cell signalling |
What does YopT do? | depolymerizes actin |
What does YopH do? | dephosphorylates signal transuction proteins |
What does YopP do? | inhibits macrophage apoptosisprevents TNFa release |
What does yersinia infection mimic? | apendicitis |
Which enterics are part of normal flora? | E. coliKlebsiella Enterobacter Proteus Serratia |
What enterics are not part of normal flora? | SalmonellaShigella Yersinia Pathogenic E. coli |
What types of ideas do pathogenic enterics cause? | endotoxic shockUTIs diarrhea |
What does E. coli cause? | UTI, gastroenteritis, septicemia (from UTI/GE), neonatal meningitis |
Source of E. coli infection? | Patients own flora |
What are the 6 pathogenic categories of pathogenic E. coli? | EnterotoxigenicEnteropathogenic Enteroinvasive Enterohemmorhagic Enteraggregative Diffuse aggregative |
What does ETEC cause? | traveler's diarrhea |
What are ETEC's main virulence factors? | LT and STLT1 similar to CTX LT2 no known role STa STb |
How to treat ETEC? | hydration |
Large/Small dose required for ETEC? | Large |
What does EPEC case? | severe watery diarrhea, nausea, vomiting, dehydration |
Dx EPEC? | DNA probe for virulence genes |
Tx EPEC? | hydration |
Which EC are most prevalent in developing world? | ETEC and EPEC |
Virulence factors of EHEC? | Stx-1 and Stx2 similar to Shiga toxin |
Where are Stx12 encoded? | Bacteriophage |
What does production of phage? | antibiotics |
What does Stx1 do? | block protein synth -> cell death |
What does Stx2 do? | develoment of hemolytic uremic syndrome |
What does EHEC do? | cause lesions on mucosal surface |
Common source of EHEC in the US | Cattle, 99% positive! |
What does EIEC cause? | water diarrhea that progresses to bloody |
Main theme of infection for EIEC | invade epithelial cellmultiple within epithelial cell spread to adjacent cell |
What does EIEC look like? | Shigella (main difference is LPS) |
EAEC causes? | watery diarrhea |
Which EC infect small bowel? | ETEC, EPEC, EAEC |
Which EC infect large bowel? | EIEC |
What is the main reservoir for Shigella? | human GI tract |
What are the four groups of Shigella? | Group A: dysenteriaeGroup B: flexneri Group C: boydii Group D: sonnei |
What differentiates the four groups of Shigella? | O-antigen of LPS |
What does Shigella cause? | HUSreactive arthritis ulcers abscesses |
Epidemiology of Shigella? | low inoculum requiredhumans only reservoir most cases in children person to person spread |
Pathogenesis of Shigella | acid tolerantvirulence plasmid |
What is the Shiga toxin used for? | HUS, fround in dysteriae |
What protein is responsible for Shigella actin based motility? | IscA |
Look at the handout for | Shigella infection route |
route for microbes | colonize -> multiply -> transmission |
colonize -> multiply for human = | infection |
multiply -> transmission for human = | disease |
transient assumes | indigenous |
carrier assumes | pathogen |
where does microbiota on a sterile baby come from? | birth canal, skin, respiration, environment |
skin microbiota? | staph epi, propioni, diph |
conjunctiva microbiota? | staph epi, corynebact |
mouth microbiota? | s. mutans, neisseria, moraxella |
stomach microbiota? | sterile! |
colon microbiota? | anaerobes: bacteroides, fuso, clostrifacultative: enterics, yeast, bifido |
nares microbiota? | same as skin + staph aureus |
nasopharynx microbiota | similar to mouth plus s. pneumo, mc, h. flu |
larynx ears, sinus | sterile! |
uriniary tract | sterile if healthy! |
vaginal microbiota | childbearing: lactobac, O2- GNRS, GPC, Gard, Myco, ureanonchildbearing: mixed, from skin, colon, perineum |
benefits of indigenous microbiota | prime, exclude, nutrition |
other sterile places? | blood, bottom of lung, kidney |
key mouse study showed? | + microbiota = more BW, ate less, stored more- microbiota = skinny, ate more, stored less |
can a dead pathogen causes infectious disease? | no |
ML | MC/GC |
Tinsdale | c. diph |
fletcher | leptospira |
charcoal | legionella |
TCBS | vibrio |
sources of antibiotics? | 1. naturally-occuring2. semi-synthetic 3. synthetic |
define therapeutic index (TI) | a measure of the relative difference between the effective dose and the toxic doseTI = toxic dose/therapeutic dose |
MBC ~ MIC, cidal or static? | bactericidal |
MBC >>> MIC, cidal or static? | bacteriostatic |
when would a physician recommend bactericidal therapy? | immunocompromised hostssites of infection |
how to assay antimicrobial activity? | in vitro: kirby-bauer (qualitative) disc diffusion, broth dilution, agar dilution, e-test (quantitative) |
clinical pharmacology aspects of antibiotics | absorptionprotein binding tissue distribution |
two classes of antimicrobial activity | time-dependent killingconcentration-dependent killing |
things to consider when combining antibiotics | 1. broadened spectrum2. reduce likelihood of resistance 3. efficacy |
three classes of antibiotic combos | synergisticantagonistic additive |
major mechanisms of resistance | drug modificationalteration of drug site decrease access to target site |
major classes of antimicrobial agents | 1. inhibit cell wall synthesis2. inhibit protein synthesis 3. inhibit nucleic acid synthesis 4. antimetabolites 5. misc |
what antibiotics inhibit cell wall synthesis? | beta lactams, glycopeptides |
what antibiotics inhibit protein synthesis? | aminoglycosidestetracyclines macrolides lincosamides streptogramins oxazolidinones chloramphenicol |
which antibiotics inhibit nucleic acid synthesis? | quinolonesrifampin |
which antibiotics are antimetabolites? | trimethoprimsulfamethoxazole |
miscellaneous antibiotics? | metronidazolenitrofurantoin lipopeptides |
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