MICROM 442 Midterm II

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jusdel  on February 14, 2012

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MICROM 442 Midterm II

H. influenzae is a primary pathogen for?
pediatric, 6 to 18 months of age
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H. influenzae is a primary pathogen for? pediatric, 6 to 18 months of age
Feature of H flu that makes it virulent? type b capsule (PRP)
Main source of vaccine? protein linked PRP conjugate
Type B H. flu causes which diseases? meningitis at 2 years or younger, epiglottitis and pneumonia 2-5 years
capsule helps against immune system how? antiphagocytic
failed vaccine was conjugated with? carbohydrate
non-typable H. flu causes? otitis media
route of spread for meningitis? respiratory tract -> bacteremia -> CNS
epiglottitis symptoms? rapid progression within 24 hours
sore throat
fever
barking cough
otitis media and sinusitis source of infection displacement from normal microbiota
cellulitis and sinusitis source of infection respiratory tract infection
requirements of h. flu diagonsis requires x factor (hematin)
requires v factor (NAD)
growth on CA
difference between h. influenzae and h. parainfluenzae? h. para does not require X, biology similar to non-encapsulated h. influenzae
shape of haemophilus? gram negative coccobacilli
common diseases for h. ducreyii? venereal disease in developing world
enhances HIV transmission
symptoms of h. d? chancroid with satellite lesions
diagnosis of h. d gram stain, culture on chocolate and vancoymcin (33 degrees, 5% CO2)
rule out syphilis with dark field stop
serology
Bordatella pertussis site of infection ciliated respiratory epithelium that lines the airways
how does B. pertussis spread? aerosolized droplets
BP uses what for attachment FHA and pili
toxins of BP? TCT (tracheal cytotoxin) PG-fragment that destroys ciliated cells via NO and IL-1

PT: AB toxin, ADP-ribosylates G-protein, increased cAMP creates lymphocytosis

ACT: catalyzes ATP to cAMP, acts as hemolysin
what controls BP toxins? Bvg, two component regulatory system
Clinical manifestations of BP? whooping cough/pertussis
whooping cough characteristics 95% attack rate for unimmunized
asymptomatic carriage
cause of persistent cough
BP vaccine part of which vaccine? DTaP
complications from BP infection? pneumonia
dehydration
malnourishment
brain damage
BP symptoms caused by what other Bordatella? B. parapertussis
diagnosis of BP? lymphocytosis
culture on selective media
DFA
PCR
growth characteristic of Bordatella? fastidious
Other Bordetella? bronchiseptica: kennel cough, sepsis
hinzii: HIV patient blood, ascending cholangitis
holmesii: cultured from blood of patients with significant medical problems
Mycoplasma pneumonia characteristics smallest free-living bacteria
pleomorphic filaments
no cell wall
sterol cell membrane
strict aerobe
no alternative sigma factors
"austere genome"
terminal organelle
MP causes respiratory tract infections: tracheobronchitis, pneumonia, "walking pneumoniae"
MP causes disease in which age group? children and adolescents
MP attachment via? adhesin protein P1
MP diagnosis? PCR
how does LP facilitate phagocytosis? porin molecule binds C3
Type IV secretion used for? altered phagosome, delays phagolysosomal fusion, resembles autophagy
LP life in macrophage? nutrient acquisition from macrophage until bacteria starves, kills mac and moves on
clinical manifestation of LP Legionaires disease: headache, myalgia, rising fever, dry cough, necrotizing pneumoniae,
different serogroups of LP epidemic (group 1)
nosocomial (group 6)
other clinical manifestations of LP? Pontiac fever
other Legionella? micdadei
LP diagonsis? DFA, carbol fuchisin
culture with BCYE pH<7.0
General characteristics of Neisseria? GNDC
require enrich medium and CO2
oxidase positive
differentiate via sugar utilization
host range of Neisseria obligate human pathogens
structure/antigengs of GC gram negative cell wall
Por/Opa
LOS
pili
Pili host receptors CD46 of male urogenital epithelial cells
CR3 of female cervical epithelium
Variation of pili phase variation
sequence variation
antigenic variations
Antigenic variation of pili 6 different immunodominant variability regions
pilS (silent genes) pilE (active gene)
pilin variation via recombination transformation or intrachromosomal
10e6 different variants of pilin
Outer membrane proteins of GC? Por (OMP I) and Opa (OMP II)
Por characteristics 50-60% of total protein
most abundant structural surface protein
trimers for aqueous channels for porin function
involved with attachment and invasion of host (binds to CR3)
Por antigenic variations one antigenic type, with some variation
1A = disseminated, 1B = genital infections
Opa characteristics ~12 genes (3-4 in MC)
0-3 genes may be expressed
functions in close attachment to host cells
What determines colony morphology of GC? Opa
What does Opa bind to? cell surface proteoglycans
extracellular matrix proteins
Variation in opa phase and antigenic
may relate to microenvironment
Cervical isolates of Opa are? positive for Opa
Elsewhere in GU Opa is negative
Phase variation of OPA separate promoters
constitutively transcribed
translationlly controlled
Phase variation of OPA is controlled by? CTCTT repeats that change frame
even number of repeats = in frame?
Antigenic variation of Opa 12 opa genes
recombination inf hypervariable region
Lipooligosaccharide (LOS) general characteristics similar to LPS of enterics, but lacks repeating subunits
maybe sialyated in vivo
LOS aid in pathogenicity production of inflammatory mediators
attachment to some host cells
serum resistant if sialyated
male vs. female pathogenesis acute in males
asymptomatic in females
cases of pathogenesis in males pili attachment to GU tract (CD46) cannot internalize
Opa leads to closer adhesion to host cells leading to internalization
GC pathogenesis in males: invasion enter and multiply within epithelial cells, which reach the mucosa
triggers inflammatory response
leads to hematogenous
GC pathogenesis in females Pili and Por bind to CR3 of cervical epithelium
iC3b deposits on LOS, binds to CR3
internalization does not trigger inflammatory response
Natural immunity to GC caused by? colonization with commensal Neisseria and others
killing by NHS and complement
Immune response to GC IgM and IgG and IgA against Por and Los
Opsonic antibodies against pili and Opa
GC phagocytosed by neutrophils (fate?)
Evasion of immune response by GC antigenic/phase variation
sialyation of LOS
IgA protease
Clinical manifestation Urethritis
Cervicitis
Salpingitis
Dissemination
Asympytomatic percentage of carriers of GC 40% males
80% females
GC Urethritis in males 1-14 day incubation
Dysuria/urethral discharge
edema and erythema
spontaneous resolution without therapy
complications of urethritis epididymitis
prostatis
GC GU infections in females dysuria
discharge
instramenstrual bleeding
inflammation of fallopian tube
Disseminated gonorrhea leads to lesions
arithritis
dermatitis
0.5-3% untreated patients
Dx GC culture via TM media
Gram stain for intracellular GNDC
PCR
Treatment of GC cephalosporins, quinolones
rise of penicillin resistance
MC general characteristics same as GC (has capsule)
genetic islands that separate it out
major antigens of MC CPS, LOS, pili, OMPs
What determines serological groups of MC? Capsule (ABCWY cause most serious disease)
Target of vaccines CPS
Pathogenesis of MC attachment via pili to oropharynx
extracellular pathogen
disseminated from pharynx via blood stream, cross blood brain barrier at choroid plexus (vasculated portion of BBB)
Evasion of immune response IgA protease for intracellular survival and IgA inactivation
Immunity via? presence of bactericidal antibodies against Por Opc and LOS

opsonic antibodies during carriage of N. lactamica and other cross-reactive species
Susceptibility via? Lack of active complement
LOS induces TNF and IL = shock, hemorrhages, meningitis
Manifestations of MC if entered blood meningitis (30-40%)
meningococcemia (10-30%)
first 2 combined (30-40)
fulminant meningoccemia (10-20%) (DEAD IN A DAY!)
causes of fulminant meningococcemia lack of complement, opsonization, bacteridicidal antibodies
Clinical manifestations asymptomatic carriage (usually transient)
meningitis (can occur without signs of sepsis)
meningococcemia
fulminent MC (inflammatory response to LOS)
MC Dx CSF gram stain
DX
latex agglutination (CPS)
PCR
Treatment of MC Pen G with (children + steroid theapy)
cephaosporins
lysis of MC good or bad? bad, leads to inflammation
Review the differential characteristics between pathogenic spirochetes...
Spriochetes include Treponema, Leptospira, Borrelia
cell wall structure of spirochetes...
what is the working definition of an anaerobe? fails to grow on the surface of a solid medium in air containing 5-10% CO2
How is oxygen toxic to anaerobes? Can be converted to H2O2
Lack catalase and SOD
Reduced activity for some enzymes
How is one predisposed to anaerobe pathogenesis? surgery (bowel)
vascular disease
impaired host defense
prolonged antibiotic therapy
chronic disease
mixed wound infection
Virulence factors associated with anaerobes antibiotic resistance (Bacteroides)
Exotoxins/Exoenzymes (neurotoxins from C. tet and C. bot)
Degradative enzymes (lecithinase from C. perf)
Diagnostic associations of anaerobes Putrid color
Transport filled with CO2 or N2
Gram stain (spore formers)
Fastidious
Anaerobic culturing
Treatment of anaerobes Drainage/debridement of necrotic tissue
Combination of Abx
How to prevent anaerobe infection avoid reduction of redox potential
prevent movement of normal flora to non-desired places
prophylactic antibiotics after certain surgeries/procedures
Sporeforming anaerobes that cause disease Clostridum:
tetani, botulinum, perfringens, septicum, novyi, histolyticum, difficile
Which Clostridia cause myonecrosis? perfringens, septicum, novyi, histolyticum
Clostridum general characteristics anaerobic, gram positive spore forming, strict anaerobes
Natural reservoir for clos? soil, GI tract of humans and other animals
Etiology of Clostridial wound infections mixed infection following surgery or trauma
Common pathogens with Clostridial wound infections perfrigens (A), septicum, novyi, histolyticum
How can a wound infection manifest? superficial wound contamination
anaerobic cellulitis/crepitus(gas)
gas gangrene
Main source of pathogenesis of clostridial wound infections? toxins
alpha toxin (phospholipase or lecithinase C)
theta toxin (perfringolysin) pore forming
others
Host defenses present? None.
Dx of Clostridial wound infections gas in tissues (could be other bacteria)
typical lesions
Lab cultures to verify Clostridial Dx? many, plump gram positive bacilli
anaerobic growth
double zone of hemolysis
lecithinase activity
nagler reaction
Treatment/Prevention of Clostridial WI? debridement/cleansing
penicillin
hyperbaric O2/antitoxin (controversial)
Main cause of anaerobic food poisoning? Clostridium perfringens
Source of C. perf? Meat products
How many cells required for C. perf infection? 10E6 - 10E7 cells/gm
Virulence factors associated with C. perf? spore germination
produce enterotoxin when in small intestine during sporulation
Effect of C. perf enterotoxin? pores in enterocytes
Dx of C. perf 7-22 hours post ingestion
diarrhea, cramps, ab pain

verify via spores
Treatment of C. perf? supportive therapy, has low mortality rate
Source of C. bot spores? soil, silt, vegetation
Types of foods incriminated in C. bot poisoning? home canned foods
preserved fish
prepared meats uncooked
Symptoms of botulism 12-96 hour incubation period
flaccid paralysis
Action of botulinum toxin absorbed in intestine
transported to neuromuscular junctions via blood stream
block neurotransmitter secretion
paralysis leading to respiratory failure and death
host defenses against BT immunity per type
does not induce protective immunity
Dx of BT vomitting, constipation
paralysis of motor nerves
Lab Dx of BT Isolation
Demonstration of toxin
CSF to rule out others
Treatment/Control of BT suspicion will initiate therapy
eliminate unabsorbed toxin: lavage/enemas
eliminate source
neutralize unbound
supportive care (respiratory)
antitoxin therapy
antibiotics for wound and infantile
Movement of tetanus toxin Move along nerve fibers
High risk population for tetanus? Elderly, 50% mortality for older than 60 years
Action of tetanus toxin? Blocks secretion of inhibitory neurotransmitters
Clinical Dx of tet? clinical manifestations
cramping and twitching of muscles around wound
early diagnosis is critical
Lab Dx of tet? isolation of organism
spores = presumptive
demonstration of toxin
Immunity against tetanus antitoxin
toxoid immunization
recovery does not grant immunity
Treatment of tetatnus antibiotics
airway maintenance
GABA agonists
tetanus immune globulin
Structure of tetanus and botulinum toxins 150 kDa that is released via cell autolysis
Three domains: Hc (neurospecific binding), Hn (membrane translocation), L (catalytic activity)
Processing of TT and BT proteolysis cleaves L chain off, reduction reduces sulfur bridge, release light unit that is transported to neuron
Catalytic effects of TT and BT Cleaves membrane protein that prevents fusion with cell membrane
Site of TT VAMP
Site of BT GBDF = VAMP
C = Syntaxin
AE = SNAP25
Pseudomembraenous colitis is associated with? Clostridium difficile
Two principal toxins exotoxins TcdA and TcdB (45% homology at AA)
Domains of TcdAB? receptor binding
membrane translocation
glucosyl transferase activity
Catalytic activity of TcdAB? inactivate Rho proteins via glucose transfer
Pathology of C. dif colon
severe abdominal pain: watery diarrhea, mucus, blood
pseudomembrane
27-44% mortality rate
Dx of C. dif pseudomembrane
isolate from stool, test for toxin
assay for toxin
Host defense to C. dif unknown, toxin is decent Ag
Treatment of C. dif Vancomycin and metronidazole
epidemiology of C. dif healthcare associated
virulent strain isolated with mutation in regulatory gene, (16 to 24x more AB toxin)
resistant to fluoroquinolones
Nonsporeforming anaerobic disease agents Bacteroides
Prevotella
Fusobacterium
General characteristics of NSF anaerobes 1/3 of anaerobic clinical isolates
normal flora on mucosal surfaces
extracellular parasites
most common organism in GI tract? Bacteroides fragilis
What is a common between the NSF anaerobes? Generally oxygen tolerant
Where is B. frag found? GI, vagina, cervix
Where does B. frag cause disease? lower half of body
Is B. frag bile resistant? yes
What diseases does B. frag cause? intra-abdominal abscesses
skin and soft tissue infections
mild diarrhea
What virulence factors does B. frag have? CPS
exoenzymes: SOD, peroxidase, ECMases
endotoxin
pili
penR
Dx of BF abscesses
gram stain and culture
Tx of BF antibiotics
drainage of abscess
General characteristics of Prevotella melaninogenica part of oral microbiota
also found on external genitalia
black pigment on blood agar
Dx of PM periodontal disease
aspiration pneumonia
lung abscesses
chronic sinusitis
otitis
Virulence factors of PM capsule
extracellular enzymes: phospholipase A
Dx of PM Gram stain and culture
Tx of PM antibiotics (penicillin, metronidazole)
Characteristics of Fusobacterium necrophorum and nucleatum thin rods with pointed ends
normal microbiota of oral cavity
infect upper half of body
necrophorum has lipase and leukocidal toxin
Characteristics of Actinomyces israelii gram-positive anaerobic rod
branching, filamentous, no spores
slow growing
CM of AI cervicofacial infections via poor hygiene and disruption of mucosal barrier or aspiration
actinomycosis
Dx of AI sulfur granule like colony on pus
culture
biochemical tests
Tx of I high doses of penicillin with long term therapy
What defines a biofilm infection? associated with some sort of surface
bacteria live in matrix encased groups or colonies
infection is confined to a particular location
infection is resistant in vivo despite antibiotic sensitive
What are common themes for most bacterial pathogens? Adhere to host
Evade host immune system
Establish colonization and reproduce
What are the common themes in Salmonella and Yersinia pathogenesis? Gram negative facultative anaerobic rodes
Cause systemic and GI diseases
Utilize T3SS encoded on pathogenicity islands
Adhere to M-cells of peyer's patches
Host range of Salmonella? wide range of vertebrate hosts
What type of pathogen is salmonella? facultative intracellular pathogen that can resides in mononuclear phagocytes
What are the mechanisms of salmonella host adaptation? Many, but poorly understood
Cell shape for Salmonella Gram-negative rod with peritrichous flagellae
Does Salmonella ferment lactose? No
What other indication of Salmonella? H2S formation
What types of media used to select/isolate Salmonella? SS, Hektoen, XLT, Mac
Serology of Salmonella? O antigen from LPS, H antigen from flagella, Vi-antigen: polysaccharide capsule
Clinical manifestations of non typhoid Salmonella fever, ab cramps, diarrhea (sometimes bloody), localized sepsis, global sepsis
How is non-typhoid Salmonella spread? ingestion of contaminated food, water, or contact with infected animals
What causes salmenoellosis? 50% either Typhimurium or Enteritidis, Newport next prevalent
Clinical manifestations of Typhoidal Salmonella? fever, headache, constipation, malaise, chills, myalgia, confusions, delirium, intestinal perforation, death
Where can etiologal agent of typhoid be isolated from? blood stream, marrow, stool, urine
What causes typhoid? Salmonella enterica serogroup Typhi
Clincal features of Typhi 10-14 day incubation
found in stool 2nd week on
carriers
Where can Typhi reside? gallbladder
Which SPI encodes Vi antigen SPI7
Vaccines exist? Yes, Ty21, live attenuated
Main differences between Typhi and Typhimurium? Typhi is host adapted
Typhi causes systemic infection with little diarrhea
Typhi has a vaccine
Typhi can evoke carrier state
Route of infection for Salmonella oral ingestion (smaller dose required if food is buffered)
travel to distal ileum where uptake is mediated by M-cells and CD18+
Invade M-cells and CD18 via SPI-1
Ruffling up epithelial cells facilitates uptake
Encounter phagocytic cells in lamina propria, survival mediated by SPI-2
What does SPI-1 secrete? SipA and SipC that mediate actin rearrangement, inducing uptake, not required for systemic invasion
What does SPI-2 do? prevent assembly of NADPH oxidase on SCVs, allowing systemic infection
SPI-3 does? magnesium transport required for macrophage growth
Spi 4 is for? survival in macrophages
SPI-5 encodes what? Pips, required for enterititis and possible neutrophil attraction
SPI-7 encodes? Vi antigen
plasmid can be lost in vitro, found in all clinical isolates
Yersinia virulence factors? Invasin
Yops
Yersinabactin
What does invasin do? facilitate uptake by host cells
What does YopE do? depolymerizes actin
What does YopO do? phosphorylates host proteins-disrupts cell signalling
What does YopT do? depolymerizes actin
What does YopH do? dephosphorylates signal transuction proteins
What does YopP do? inhibits macrophage apoptosis
prevents TNFa release
What does yersinia infection mimic? apendicitis
Which enterics are part of normal flora? E. coli
Klebsiella
Enterobacter
Proteus
Serratia
What enterics are not part of normal flora? Salmonella
Shigella
Yersinia
Pathogenic E. coli
What types of ideas do pathogenic enterics cause? endotoxic shock
UTIs
diarrhea
What does E. coli cause? UTI, gastroenteritis, septicemia (from UTI/GE), neonatal meningitis
Source of E. coli infection? Patients own flora
What are the 6 pathogenic categories of pathogenic E. coli? Enterotoxigenic
Enteropathogenic
Enteroinvasive
Enterohemmorhagic
Enteraggregative
Diffuse aggregative
What does ETEC cause? traveler's diarrhea
What are ETEC's main virulence factors? LT and ST
LT1 similar to CTX
LT2 no known role
STa
STb
How to treat ETEC? hydration
Large/Small dose required for ETEC? Large
What does EPEC case? severe watery diarrhea, nausea, vomiting, dehydration
Dx EPEC? DNA probe for virulence genes
Tx EPEC? hydration
Which EC are most prevalent in developing world? ETEC and EPEC
Virulence factors of EHEC? Stx-1 and Stx2 similar to Shiga toxin
Where are Stx12 encoded? Bacteriophage
What does production of phage? antibiotics
What does Stx1 do? block protein synth -> cell death
What does Stx2 do? develoment of hemolytic uremic syndrome
What does EHEC do? cause lesions on mucosal surface
Common source of EHEC in the US Cattle, 99% positive!
What does EIEC cause? water diarrhea that progresses to bloody
Main theme of infection for EIEC invade epithelial cell
multiple within epithelial cell
spread to adjacent cell
What does EIEC look like? Shigella (main difference is LPS)
EAEC causes? watery diarrhea
Which EC infect small bowel? ETEC, EPEC, EAEC
Which EC infect large bowel? EIEC
What is the main reservoir for Shigella? human GI tract
What are the four groups of Shigella? Group A: dysenteriae
Group B: flexneri
Group C: boydii
Group D: sonnei
What differentiates the four groups of Shigella? O-antigen of LPS
What does Shigella cause? HUS
reactive arthritis
ulcers
abscesses
Epidemiology of Shigella? low inoculum required
humans only reservoir
most cases in children
person to person spread
Pathogenesis of Shigella acid tolerant
virulence plasmid
What is the Shiga toxin used for? HUS, fround in dysteriae
What protein is responsible for Shigella actin based motility? IscA
Look at the handout for Shigella infection route
route for microbes colonize -> multiply -> transmission
colonize -> multiply for human = infection
multiply -> transmission for human = disease
transient assumes indigenous
carrier assumes pathogen
where does microbiota on a sterile baby come from? birth canal, skin, respiration, environment
skin microbiota? staph epi, propioni, diph
conjunctiva microbiota? staph epi, corynebact
mouth microbiota? s. mutans, neisseria, moraxella
stomach microbiota? sterile!
colon microbiota? anaerobes: bacteroides, fuso, clostri
facultative: enterics, yeast, bifido
nares microbiota? same as skin + staph aureus
nasopharynx microbiota similar to mouth plus s. pneumo, mc, h. flu
larynx ears, sinus sterile!
uriniary tract sterile if healthy!
vaginal microbiota childbearing: lactobac, O2- GNRS, GPC, Gard, Myco, urea

nonchildbearing: mixed, from skin, colon, perineum
benefits of indigenous microbiota prime, exclude, nutrition
other sterile places? blood, bottom of lung, kidney
key mouse study showed? + microbiota = more BW, ate less, stored more
- microbiota = skinny, ate more, stored less
can a dead pathogen causes infectious disease? no
ML MC/GC
Tinsdale c. diph
fletcher leptospira
charcoal legionella
TCBS vibrio
sources of antibiotics? 1. naturally-occuring
2. semi-synthetic
3. synthetic
define therapeutic index (TI) a measure of the relative difference between the effective dose and the toxic dose

TI = toxic dose/therapeutic dose
MBC ~ MIC, cidal or static? bactericidal
MBC >>> MIC, cidal or static? bacteriostatic
when would a physician recommend bactericidal therapy? immunocompromised hosts
sites of infection
how to assay antimicrobial activity? in vitro: kirby-bauer (qualitative) disc diffusion, broth dilution, agar dilution, e-test (quantitative)
clinical pharmacology aspects of antibiotics absorption
protein binding
tissue distribution
two classes of antimicrobial activity time-dependent killing
concentration-dependent killing
things to consider when combining antibiotics 1. broadened spectrum
2. reduce likelihood of resistance
3. efficacy
three classes of antibiotic combos synergistic
antagonistic
additive
major mechanisms of resistance drug modification
alteration of drug site
decrease access to target site
major classes of antimicrobial agents 1. inhibit cell wall synthesis
2. inhibit protein synthesis
3. inhibit nucleic acid synthesis
4. antimetabolites
5. misc
what antibiotics inhibit cell wall synthesis? beta lactams, glycopeptides
what antibiotics inhibit protein synthesis? aminoglycosides
tetracyclines
macrolides
lincosamides
streptogramins
oxazolidinones
chloramphenicol
which antibiotics inhibit nucleic acid synthesis? quinolones
rifampin
which antibiotics are antimetabolites? trimethoprim
sulfamethoxazole
miscellaneous antibiotics? metronidazole
nitrofurantoin
lipopeptides

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