AP BIOLOGY CHAPTER 4

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allisonswag  on August 8, 2012

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ap, ap bio, biology, chapter 4, carbon, carbon and the molecular diversity of life

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Carbon and the Molecular Diversity of Life - Biology, Seventh Edition, Campbell Reese

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AP BIOLOGY CHAPTER 4

organic chemistry
the branch of chemistry that specializes in the study of carbon compounds
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organic chemistry the branch of chemistry that specializes in the study of carbon compounds
vitalism belief in a life force outside the jurisdiction of physical and chemical laws; eventually crumbled after lab synthesis of complex organic molecules
mechanism the view that all natural phenomena, including the processes of life are governed by physical and chemical laws
tetravalence A molecule branching off in four directions; carbon is an example of this, a quality allowing it to be extremely versatile
hydrocarbon organic chemicals that consist of only hydrogen and carbon
isomers compounds that have the same numbers of atoms of the same elements but different structures and hence different properties
structural isomers compounds that have the same molecular formula but differ in the covalent arrangements of their atoms
geometric isomers compounds that have the same molecular formula but differ in the spatial arrangements of their atoms
enantiomers one of two compounds that are mirror images of each other
functional groups the components of organic molecules that are most commonly involved in chemical reactions
hydroxyl group (-OH) a hydrogen atom bonded to an oxygen, which in turn is bonded to a carbon skeleton
alcohols organic compounds containing a hydroxyl (-OH) functional group
carbonyl group (>CO) a carbon atom joined to an oxygen atom by a double bond
ketones a carbonyl group (>CO) when it is located within a carbon skeleton
aldehydes a carbonyl group (>CO) when it is located at the end of a carbon skeleton
carboxyl group (-COOH) when an oxygen atom is double bonded to a carbon atom, which is also bonded to a hydroxyl group
carboxylic acids an organic compound containing a carboxyl group
amino group (NH2) a nitrogen atom bonded to two hydrogen atoms and then to the carbon skeleton
amines an organic compound with one or more amino groups
sulfahydryl group (-SH) a sulfur atom bonded to an atom of hydrogen, resembles a hydroxyl group in shape
thiols organic compounds containing sulfahydryl groups
phosphate group (-OPO3`2) a phosphorus atom bonded to four oxygen atoms, two of which contain negative charges, with one oxygen bonded to the carbon skeleton
organic phosphates the name of the compounds in the phosphate group
functional properties of hydroxyls 1.) polar as a result of the electronegative atom oxygen pulling hydrogens electron towards itself
2.) attracts water molecules, helping dissolve organic compounds such as sugars
functional properties of carbonyls 1.) a ketone and an aldehyde may be structural isomers with different properties (ex: acetone and propanal)
functional properties of carboxyls 1.) has acidic properties because it is a source of hydrogen ions
2.) the covalent bond between oxygen and hydrogen is so polar that hydrogen ions (H+) tend to dissociate reversibly (changing acetic acid to acetic ions)
3.) in cells, when found in the ionic form, the ions are called a carboxylate group
functional properties of aminos 1.) acts as a base, can pick up a hydrogen, acts as a base, can pick up a proton
2.) ionized, with a charge of 1+, under cellular conditions.
functional properties of sulfhydryls 1.) two sulfhydryl groups can interact to help stabilize protein structure
functional properties of phosphates 1.) makes the molecule of which it is a part of an anion (negatively charged ion)
2.) can transfer energy between organic molecules
adenine triphosphate (ATP) primary energy-transferring molecule in the cell, contains an organic molecule attached to a string of three phosphate groups, may split off into an inorganic phosphate ion and turns ATP into ADP

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