Chapter 26

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jmaster5090  on June 23, 2010

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Chapter 26

Phylogeny
The evolutionary history of a species or group of related species
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Terms

Definitions

Phylogeny The evolutionary history of a species or group of related species
Systematics A scientific discipline focused on classifying organisms and determining their evolutionary relationships
Binomial The two part latinized name of a species consisting of the genus and specific epithet
Genus A taxonomic category above the species level, designated by the first word of a species two part scientific name
Family In classification, the taxonomic category above genus
Order In classification, the taxonomic category above the level of family
Class In classification, the taxonomic category above the level of order
Phyla (Phylum) In classification, the taxonomic category category above class
Kingdom A taxonomic category, the second broadcast after domain
Domain A taxonomic category above the kingdom level.
Taxon A named taxonomic unit at any given level of classification
Taxonomy A scientific discipline concerned with naming and classifying the diverse forms of life
Phylogenetic Tree A branching diagram that represents a hypothesis about the evolutionary history of a group of organisms
Phylocode System of classification of organisms based on evolutionary relationships: Only groups that include a common ancestor and all of its descendants are named
Branch Points The representation on a phylogenetic tree of the divergence of two or more taxa from a common ancestor
Sister Taxa Groups of organisms that share an immediate common ancestor and hence are each other's closest relatives
Rooted Describing a phylogenetic tree that contains a branch point representing the last common ancestor of all taxa in the tree
Polytomy In a phylogenetic tree a branch point from which more than two descendant taxa emerge
Analogy Similarity between two species that is due to convergent evolution rather than to descent from a common ancestor with the same trait
Homoplasy Similar structure or molecular sequence that has evolved independently develops into a bisexual gametophyte
Cladistics An approach to systematics in which organisms are places into groups called clades based primarily on common descent
Clades A group of species that includes an ancestral species and all its descendants
Monophyletic Pertaining to a group of taxa that consists of a common ancestor and all its descendants
Paraphyletic Pertaining to a group of taxa that consists of a common ancestor and some but not all of its descendants
Polyphyletic Pertaining to a group of taxa derived from two or more different ancestors
Shared Ancestral Character A character shared by members of a particular clade, that originated in an ancestor that is not a member of that clade.
Shared Derived Character An evolutionary novelty that is unique to a particular clade.
Outgroup A species or group of species from an evolutionary lineage that is known to have diverged before the lineage that contains the group of species being studied
Ingroup A species or group of species whose evolutionary relations hips we seek to determine
Maximum Parsimony A principle that states when considering multiple explanations for an observation, one should first investigate the simplest explanation that is consistent with the facts
Maximum Likelihood A principle that states that when considering multiple phylogenetic hypotheses, one should take into account the hypothesis that reflects the most likely sequence of evolutionary events, given certain rules about how DNA changes over time
Phylogenetic Bracketing An approach in which features shared by two groups of organisms are predicted to be present in their common ancestor and all of its descendants
Orthologous Genes Homologous genes that are found in different species because of speciation
Paralogous Genes Homologous genes that are found in the same genome as a result of gene duplication
Molecular Clock A method for estimating the time required for a given amount of evolutionary change, based on the observation that some regions of genomes appear to evolve at constant rates
Neutral Theory The hypothesis that much evolutionary change in genes and proteins has no effect on fitness and therefore is not influenced by Darwinian natural selection
Horizontal Gene Transfer The transfer of genes from one genome to another through mechanisms such as transposable elements, plasmid exchange, viral activity, and perhaps fusions of different organisms.
Polytomy In a phylogenetic tree, a branch point from which more than two descendant taxa emerge

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