Chapter 6 : A Tour of the Cell

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lalahj  on October 26, 2010

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ap biology

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Chapter 6 : A Tour of the Cell

light microscope
a microscope in which visible light ia passed through the specimen and then through glass lenses; can magnify effectively to 1000 times; lenses refract light so that the image of the specimen is magnified as it is projected
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light microscope a microscope in which visible light ia passed through the specimen and then through glass lenses; can magnify effectively to 1000 times; lenses refract light so that the image of the specimen is magnified as it is projected
magnification the ratio of an object's image size to its real size
resolution a measure of the clarity of the image; the minimum distance two points can be separated and be distinguished as two points
Robert Hooke Who first saw cell walls?
Anton van Leeuwenhoek Who was the first to see living cells?
contrast a measure of the accentuation of differences in a sample's parts
organelles membrane-enclosed compartments within a cell; too small to be seen with a light microscope
electron microscope a microscope that focuses a beam of electrons through the specimen or onto its surface
cell ultrastructure the cellular anatomy revealed by an electron microscope
scanning electron microscope a microscope that is especially useful for the detailed study of the surface of a specimen; electron beams scan the surface of the sample, which is usually coated with a thin film of gold, allowing electrons on the surface to be deleted and translated into an image; result is a 3D topographic image
transmission electron microscope a microscope that is used to study the internal ultrastructure of cells; aims an electron beam through a thin section of specimen that is coated with atoms of heavy metals, allowing open space to result in an image of transmitted electrons; lenses are electromagnets
cytology the study of cell structure
cell fractionation a technique for studying cell structure and function that takes cells apart and separates major organelles and other subcellular structures from one another; enables researchers to prepare specific cell components in bulk and identify
cytosol a semifluid, jelly-like substance enclosed by the membrane; contains all organelles and other components
plasma membrane a selective barrier that allows sufficient passage of oxygen, nutrients, and wastes to service the entire cell
nucleus organelle that contains most of the DNA; is the largest organelle
nuclear envelope organelle that encloses the nucleus, separating it from the cytoplasm; composed of two phospholipid bilayer membranes; perforated by pore structures, each of which has continuous membrane surrounding it
pore complex lines the nuclear envelope to regulate the entry and exit of proteins, RNA, and some large complexes of macromolecules
nuclear lamina a netlike array of protein filaments that maintains the shape of the nucleus by mechanically supporting the nuclear envelope
nuclear matrix a network of fibers that extends throughout the nuclear interior; adds extra support
chromosomes structures that carry genetic information; technically exists only when cells are dividing
chromatin the functioning form of DNA (chromosomes), a complex structure including DNA and proteins;
nucleolus a structure within the nondividing nucleus that synthesizes rRNA from instructions in DNA; also constructs ribosomal units from rRNA and protein; number depends on species and life stage of cell
ribosomes complexes made of ribosomal RNA and proteins that carry out protein synthesis
free ribosomes ribosomes that float in the cytosol to make the proteins that are used there
bound ribosomes ribosomes that are attached to the endoplasmic reticulum to make proteins to be exported, to be embedded in membranes, and to be shipped elsewhere within the cell
endomembrane system collection of different membranes within cell that carries out a variety of tasks within it; responsible for synthesis and transport of proteins, metabolism, movement of lipids, and detoxification of poisons
vesicles sacs made of membrane that transfer membrane segments within the cell
endoplasmic reticulum an extensive network of membranes that accounts for more than half of total membranes in cells
smooth endoplasmic reticulum endoplasmic reticulum whose outer surface lacks ribosomes; functions in diverse metabolic processes (lipid synthesis, metabolism of carbs, detox of poisons, production of hormones, stores calcium ions)
rough endoplasmic reticulum endoplasmic reticulum whose outer surface has ribosomes, which secrete proteins; as proteins grow, they are threaded into ER lumen through a pore formed by a protein complex in the ER membrane; as protein enters, it is folded into shape
glycoproteins proteins that have carbohydrates covalently bonded to them
Golgi apparatus organelle that modifies and stores products of the endoplasmic reticulum, such as proteins, before sending them to other parts of the cell; has a distinct structural polarity with two opposing poles (cis face and trans face) which act as receiving and shipping centers; sorts molecules according to final destination
cisternal maturation model model that explains that Golgi's cisternae progress from the cis face to the trans face, carrying and modifying cargo as they move
lysosome a membranous sac of hydrolytic enzymes that an animal cell uses to digest macromolecules; acidic environment is prime for these; responsible for intracellular digestion, such as phagocytosis
phagocytosis the occurrence in which protists eat by engulfing smaller organisms or other food particles; the resulting food vacuole fuses with the lysosome, whose enzymes digest it--products then pass into cytosol as nutrients for the cell
food vacuoles vacuoles that are formed by phagocytosis
contractile vacuoles vacuoles that pump excess water out of the cell to maintain the proper concentration of ions and molecules
central vacuolesvacuoles that develop from the culmination of smaller vacuoles originating from the ER and the Golgi apparatus; an integral part of plant cells because it selects transporting solutes (can take up to 90% of cell's volume); holds plants' proteins, inorganic ions, disposes dangerous metabolic by-products, contains color pigments, enables growth, protects from poison
mitochondria the site of cellular respiration; made of two membranes: a smooth outer, and a rough inner
chloroplasts the site of photosynthesis; made of two membranes, both smooth;
cristae the folds of a mitochondrion's inner membrane; stores the enzyme that helps make ATP
grana stacked membranous compartments within the chloroplast
thylakoid singular membranous compartment within the chloroplast
stroma fluid inside of chloroplast; contains DNA, ribosomes, and enzymes
peroxisome an oxidative organelle that is not part of the endomembrane system; imports proteins primarily from cytosol; helps detoxify hydrogen peroxide; use asexual reproduction
mitochondrial matrix a matrix enclosed by membrane mitochondria; contains enzymes, DNA, and ribosomes; catalyzes part of cellular respiration
glyoxysomes specialized peroxisomes found in fat-storing tissues of plant seeds that have enzymes which convert fatty acids to sugars; used for energy until photosynthesis occurs to produce its own sugar
cytoskeleton a network of fibers extending throughout the cytoplasm; organizes structures and activities within the cell; has three main components: microtubules, intermediate filaments, and microfilaments
microtubules hollow rods constructed from globular protein, tubulin, which consists of two polypeptide chains: an alpha tubulin and a beta tubulin; function: shape and support the cell, serve as tracks for transport for motor proteins, separate chromosomes during cell division
centrosome a region located near the nucleus that organizes microtubules that specialize in resisting compression from the cytoskeleton
centriole part of the centrosome; composed of nine fused sets of triplet microtubules arranged in a ring; they replicate before an animal cell divides
cilia microtubule-containing extensions of a cell that project it; lie perpendicular to the axis of motion; usually hundreds or thousands of these per cell
flagella microtubule-containing extensions of a cell that project it; lie in the same axis of motion; usually 1-3 per cell (humans only have these on sperm cells)
basal body the microtubule assembly of cilium or flagellum anchors to the cell based on structure that is identical to centriole
dyneins a large motor protein on the outer doublets of cilia and flagella that provides bending movement for microtubules; performs movements by conformational changes, which ATP causes with energy
microfilaments solid thread-like structures that are responsible for structure and support, amoeboid movement, and muscle contractions
actin the globular protein that makes up microfilaments
pseudopodia the part of a cell that is responsible for the conversion of cytoplasm from fluidy sol to a gel; this part functions due to localized contractions through actin and myosin movement
cytoplasmic streaming a circular flow of cytoplasm within cells that results from actin-myosin interactions; speeds distribution of materials within cell; occurs a lot around the central vacuole of plant cells
intermediate filaments an organelle specialized for bearing tension; associated with the keratin family of proteins; even after cell death, this part remains; responsible for fixing the positioning of organelles and stabilizing the cell's shape
cell wall an extracellular structure of plant cells that serves as a means of protection, maintenance of shape, and balance of water intake; holds plants against gravity (some prokaryotes, fungi, and protists have this, but animals never do)
primary cell wall the initial stage of a plant's extracellular structure; formed when microtubules in the cell cortex guide cellulose synthase as it deposits fibrils to aid in growth
cortex the outer cytoplasmic layer of a cell; has a semisolid consistency of a gel
middle lamella a structure that is situated between the primary cell walls of adjacent cells; has a layer with sticky polysaccharides, which glues adjacent cells together
secondary cell wall a structure within plants that lies between the plasma membrane and the primary cell wall to add more strength to the overall structure
extracellular matrix a structure outside of animal cells that contains glycoproteins, most of which are collagens, that create a web outside of the cell
collagen a protein that accounts for about 40% of all protein in the human body; it is embedded in networks woven from proteoglycans, which consist of small core proteins with many carbohydrate chains covalently attached
fibronectin a protein of the extracellular matrix that connects it to the cell by binding to integrin
integrin a receptor protein built into the cell's membrane that aids fibronectin's connection to the cell from the extracellular matrix
tight junction a cellular junction formed by plasma membranes of adjacent cells pressed tightly against each other and bound by proteins; they form continuous seals to prevent leakage of extracellular fluid
desmosomes a cellular junction that fastens cells together into strong sheets
gap junction a cellular junction that provides cytoplasmic channels from one cell to another (similar to plasmodesmata in plants); it allows for the passing of small molecules and is necessary for communication between cells in different tissues
compartmentalization The following are benefits of what within the eukaryotic cell? 1) individualized microenvironments, 2) membranes in membrane-bound organelles provide more surface area, 3) can store waste that would otherwise be harmful, 4) allows for space for poisons
mimicry taking on the appearance of another organism for self-defense
Batesian the type of mimicry in which an organism appears to be more dangerous than it actually is; the mimic is harmless while the model is dangerous
Mullerian the type of mimicry in which the mimic and the model are dangerous
replication the process DNA goes through when it copies itself
transcription the process that occurs when enzymes separate the two strands of DNA and replace one strand with messenger RNA, and then re-bind both strands
translation the process that occurs when protein synthesis ensues; going from RNA to a protein
triplet a sequence of DNA nucleotides that codes for an amino acid
codon a sequence of RNA nucleotides that codes for an amino acid
leader sequence a sequence of nucleotides on every messenger RNA region that merely regulates where to start the translation process
plasmodesmata narrow threads of cytoplasm that pass through the cell walls of adjacent plant cells, allowing for communication between them
aminoacyl tRNA synthetases the 64 different enzymes, each of which corresponds to a unique amino acid
anti-codon the complementary nucleotide sequence on transfer RNA that is physically positioned across from each codon on mRNA
nucleolar organizers structures within a cell that put ribosomal RNA and proteins together to form ribosomal subunits
endosymbiotic theory a theory that proposed that both mitochondria and chloroplasts were once free-living bacteria; at one point, a eukaryotic cell engulfed bacteria, and lysosomes did not come to function--bacteria are now codependent on the cell
green color that chloroplasts give
colored color that chromoplasts give
colorless color that amyloplasts give
protein pair an element of the cytoskeleton plus a motor protein (track + engine--actin + myosin)
9+2 structure the structure of cilia and flagella cross sections
radial spokes the proteins that extend from the fused doublets to the unfused central tubule within cilia and flagella; these never move--they keep the cell in tact and attached, which causes bending when other proteins move
myofibril the individual muscle strand within each muscular fiber that runs its entire length; contains microfilaments and the functioning space of muslce

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