Bio midyear Unit 2

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aboyle14  on January 18, 2012

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Bio midyear Unit 2

organic compound
a chemical compound containing the element carbon
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Terms

Definitions

organic compound a chemical compound containing the element carbon
hydrocarbon organic molecule consisting of only carbon and hydrogen
isomer organic compound with the same molecular formula but different structure; different properties
functional groups a specific configuration of atoms commonly attached to a carbon skeleton or organic molecules
hydroxyl functional group: hydrogen atom joined to an oxygen atom by polar covalent bond
-OH
carboxyl functional group: a carbon double bonded to an oxygen and the carbon bonded to a hydroxyl group
amino group functional group: a nitrogen bonded to two hydrogen atoms
macromolecules giant molecule formed by the joining of smaller molecules
polymer long molecule consisting of many similar or identical monomers linked together
monomer the subunit that serves as the building blocks of a polymer
dehydration synthesis chemical process where a polymer forms as monomer are linked by the removal of water molecules
hydrolysis chemical process that splits molecules by the addition of water
carbohydrate A sugar (monosaccharide) or one of its dimers (disaccharides) or polymers (polysaccharides)
monosaccharide the simplest carbohydrate, active alone, or serving as a monomer for disaccharides and polysaccharides
glucose simple sugar which is just a monosaccharide
fructose simple monosaccharide found in plants
disaccharide a double sugar, consisting of two monosaccahrides joined by dehydration synthesis
sucrose organic compound commonly known as table sugar
starch a storage polysaccharide in plants consisting entirely of glucose
polysaccharide a polymer of up to over a thousand monosaccharides, formed by dehydration reactions
glycogen extensively branched glucose storage polysaccharide found in the liver and muscle or animals
cellulose a structural polysaccharide of cell walls, consisting of glucose monomers
lipid family of compounds including fats, phospholipids, and steroids; they are insoluble in water
fat (triacylgylcerol) biological compound consisting of 3 fatty acids linked to one glycerol molecule
saturated fats and fatty acids whose hydrocarbon chains contain the maximum number of hydrogens and have no double covalent bonds
unsaturated fats and fatty acids whose hydrocarbon chains lack the maximum number of hydrogen atoms and have one or more double covalent bonds
waxes a lipid that consists of one fatty acid linked to an alcohol
steroids type of lipid characterized by a carbon skeleton consisting of four rings with various functional groups attached
phospholipid A molecule that is a constituent of the inner bilayer of biological membranes, having a polar, hydrophilic head and a nonpolar, hydrophobic tail
protein three dimensional biological polymer constructed from a set of 20 different monomers called amino acids
hydrophobic having an aversion to water; don't like water
enzyme protein serving as a catatyst, a chemical agent that changes the rate of a reaction without being consumed by the reaction
amino acid organic molecule possessing both carboxyl and amino groups
R group variable group; what changes to make 20 amino acids
peptide bond covalent bond between two amino acid units, formed by dehydration synthesis
denaturation when proteins unravel and it loses its native conformation, it becomes biologically inactive
primary structure the level of protein structure referring to the specific sequence of amino acids
secondary structure repetitive coiling or folding of the polypeptide backbone of a protein due to hydrogen bonds forming between peptide linkage
alpha helix a spiral shape constituting one form of the secondary structure of proteins
pleated sheets one form of secondary structure where the polypeptide chain folds back and forth, or a region of the chain is parallel to each other and are held together by hydrogen bonds
tertiary structure irregular contortions of a protein molecule due to interactions of side chains involved in A molecule that is a constituent of the inner bilayer of biological membranes, having a polar, hydrophilic head and a nonpolar, hydrophobic tail
quaternary structure The particular shape of a complex, aggregate protein, defined by the characteristic three-dimensional arrangement of its constituent subunits, each a polypeptide
nucleic acid a polymer consisting of many nucleotide monomers; serves as a blueprint for proteins, all cellular activities
DNA (deoxyribonuleic acid) double stranded, helical nucleic acid molecule capable of replicating and determining the inherited structure of a cell's proteins
RNA (ribonucleic acid) A type of nucleic acid consisting of nucleotide monomers with a ribose sugar and the nitrogenous bases adenine (A), cytosine (C), guanine (G), and uracil (U); usually single-stranded
genes* a unit of hereditary information consisting of a specific nucleotide sequence in DNA
nucleotide the building blocks of a nucleic acid, consisting of a five-carbon sugar covalently bonded to a nitrogen base, and phosphate group
phosphate group* a functional group important in energy transfer
double helix The form of native DNA, referring to its two adjacent polynucleotide strands wound into a spiral shape
energy the capacity to do work
kinetic energy the energy of motion, directly related to the speed of that motion
heat the total amount of kinetic energy due to molecular motion in a body of matter
potential energy the energy stored by matter as a result of its location
chemical energy energy stored in the chemical bonds of molecules
endergonic reaction nonspontaneous chemical reaction in which free energy is absorbed from the surroundings
exergonic reaction spontaneous chemical reaction in which there is a net release of new energy
metabolism is the set of chemical reactions that happen in the cells of living organisms to sustain life
ATP (adenosine triphosphate)An adenine-containing nucleoside triphosphate that releases free energy when its phosphate bonds are hydrolyzed. This energy is used to drive endergonic reactions in cells
energy coupling in cellular metabolism, the use of energy released from an exergonic reaction to drive an endergonic reaction
phoshorylation the transfer of a phosphate group to a molecule
energy of activation the amount of energy that reactants must absorb before a chemical reaction will start
substrate the reactant on which an enzyme work
active site the specific portion of an enzyme that attaches to the substrate by means of weak chemical bonds
cofactors Any nonprotein molecule or ion that is required for the proper functioning of an enzyme
coenzyme an organic molecule serving as a cofactor
inhibitor a molecule that binds to enzymes and decreases their activity
omnivores on organism that eats both plants, and meat
herbivore an organism that only eats plants
carnivore and organism only eats meat
ingestion A heterotrophic mode of nutrition in which other organisms or detritus are eaten whole or in pieces
digestion The process of breaking down food into molecules small enough for the body to absorb
absorption The uptake of small nutrient molecules by an organism's own body; the third main stage of food processing, following digestion
elimination The passing of undigested material out of the digestive compartment
pharynx An area in the vertebrate throat where air and food passages cross
peristalsis Rhythmic waves of contraction of smooth muscle that push food along the digestive tract
pyloric sphincter a muscular ring that regulates the passage of food out of the stomach and into the small intestine
trachea windpipe
epiglottis a flap of cartilage located in the throat behind the tongue and in front of the larynx
esophagus A channel that conducts food, by peristalsis, from the pharynx to the stomach
gastrin* A digestive hormone, secreted by the stomach, that stimulates the secretion of gastric juice
acid chyme* A mixture of recently swallowed food and gastric juice
small intestine The longest section of the alimentary canal. It is the principal site of the enzymatic hydrolysis of food macromolecules and the absorption of nutrients
pancreas A gland with dual functions: The ndocrine portion secretes digestive enzymes and an alkaline solution into the small intestine via a duct; the endocrine portion secretes the hormones insulin and glucagon into the blood
liver it performs diverse functions such as producing bile, preparing nitrogenous wastes for disposal, and detoxifying poisonous chemicals in the blood
bile A mixture of substances that is produced in the liver, stored in the gall bladder, and acts as a detergent to aid in the digestion and absorption of fats
villi A fingerlike projection of the inner surface of the small intestine
microvilli One of many fine, fingerlike projections of the epithelial cells in the lumen of the small intestine that increase its surface area
large intestine (colon) The tubular portion of the vertebrate alimentary tract between the small intestine and the anus
rectum The terminal portion of the large intestine where the feces are stored until they are eliminated
feces the waste product from the digestive track
appendix A small, fingerlike extension of the vertebrate cecum; contains a mass of white blood cells that contribute to immunity
gallbladder An organ that stores bile and releases it as needed into the small intestine
Salivary amylase catalyst (enzyme) breaks sugar into starches, start of digestion
pepsin in stomach, digestive enzyme --> turns proteins into peptides
trypsin in stomach, digestive enzyme, produced in the pancreas --> breaks down peptides
dipeptide made by linking 2 or more amino acids by dehydration synthesis
pancreatic amylase an enzyme that catalyzes the hydrolysis of starch into smaller carbohydrate molecules
sucrase* an enzyme that catalyzes the hydrolysis of sucrose to fructose and glucose
lactase* an enzyme involved in the hydrolysis of the disaccharide lactose into constituent galactose and glucose monomers
bile salts aids the digestion of lipids in the small intestine
Kilocalorie calories on food label; the amount of heat energy required to raise the temperature of 1 kg of water by 1°C
mineral In nutrition, a chemical element other than hydrogen, oxygen, or nitrogen that an organism requires for proper body functioning
vitamin An organic molecule required in the diet in very small amounts

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