Biology 111: Exam 1

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sumobob123  on February 5, 2012

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Biology 111: Exam 1

polymers
carbohydrates, proteins, and nucleic acids, built by chains of monomers
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polymers carbohydrates, proteins, and nucleic acids, built by chains of monomers
dehydration reactions monomers form larger molecules by releasing water molecules
hydrolysis polymers disassemble
carbohydrates -fuel, carbon sources that can be converted to other molecules or combined into polymers
-monosaccharides, disaccharides, polysaccharides
hydroxyl -OH
-polar
carbonyl - O=C
-Ketones and aldehydes
ketones carbonyl group is within a carbon skeleton
-acetone
aldeyhyde -the carbonyl groups is at the end of the carbon skeleton
-propanol
carboxyl - O=C-OH
-organic acids, like acetic acid
-acts as a acid and found in cells in the ionized form with a charge of 1-
-can donate an H+
amino -NH2
-acts as a base
-can pick up and H+ from surrounding solution
sulfhydryl -SH
-thiols: cysteine
-two of these can react forming covalent bonds
-cross-linking
phosphate - O=P-2OH-O
-contributes a negative charge to the molecule of which it is a part
-molecules with this group have the potential to react with water, releasing energy
methyl -CH3
-addition of this group to DNA or molecules bound to DNA, affects the expression of genes
dehydration synthesis -process in which monomers are connected by a reaction in which two molecules are covalently bonded to each other, with the loss of a water molecule, forming sugar
fatty acid -a long carbon skeleton, part of a carboxyl group
-nonpolar, causes hydrophobia, which allows fat to separate from water
triglycerides -contains three fatty acid molecules bonded to one glycerol by an ester linkage, a bond between a hydroxyl and a carboxyl
-store energy, protection for inner layers, provides structure in brain, saturated/unsaturated fats
phospholipids -essential for cells because they make up the cell membrane
-two fatty acids attached to a glycerol, which is joined to a phosphate group
-hydrocarbon tail is hydrophobic, while the phosphate group attaches to form a hydrophilic head
-assemble into bilayers when added to water
steroids -lipids characterized by a carbon skeleton consisting of four fused rings
-different groups attach to these rings forming hormones
protein -a biologically functional molecule that consists of one or more polypeptides, each folded and fouled into a specific three-d structure
-every function of a living thing depends on these
-amino acids, enzymes etc
amino acids -same set of 20 constructs all proteins
enzymatic proteins -selective acceleration of chemical reactions
defensive proteins -protection against disease
-antibodies
storage proteins -holds amino acids
transport proteins -movement of substances through body and cell
-hemoglobin
hormonal proteins -coordination of an organism's activities
-insulin
receptor proteins -response of cell to chemical stimuli
-nerve cells
contractile and motor proteins -movement
-flagella
structural proteins -support
-keratin, chitin, collage
polypeptides -unique linear amino acid sequence
-N-terminus and C-terminus
-when folded together with other, makes up a molecule
primary structure -linked, linear series of amino acids, with a unique sequence
-dictates other structures due to the chemical nature of the backbone and the side chains (R-groups)
secondary structure -regions stabilized by hydrogen bonds between atoms of the polypeptide chain, coiled into patterns
-alpha helix, ß- pleated sheet
alpha helix -a delicate coil held together by hydrogen bonding between every fourth amino acid
ß- pleated sheet -two or more strands of the polypeptide chain lying side by side are connected by hydrogen bonds between parts of the two parallel polypeptide backbones
tertiary structure -overall shape of a polypeptide resulting from interactions between the side chains of the various amino acids
quaternary structure -the overall protein structure that results from the aggregation of these polypeptide subunits
denaturation -if the pH, salt concentration, temperature or other aspects of the environment are altered, the weak bonds and interactions within a protein may be destroyed, causing the protein to change shape and unravel
chaperonins -protein molecules that assist in the proper folding of other proteins
nucleic acids -polymers made of monomers called nucleotides, that determine primary structure
nucleotide -a monomer consisting of three parts: a nitrogenous base, a pentose, and one or more phosphate group
nitrogenous bases -pyrimidines and purines
pyrimidines -one, six-membered ring of carbon and nitrogen atoms
-cytosine, thymine and uracil
purines -six-membered ring fused to a five member ring
-adenine and guanine
cytoskeleton -reinforces cell's shape; functions in cell movement; components are made of proteins
-includes: microfilaments, intermediate filaments, and microtubules
peroxisome -organelle with various specialized metabolic functions; produces hydrogen peroxide as a by-product, then converts it to water
mitochondria -organelle where cellular respiration occurs and most ATP is generated
lysosome -digestive organelle where macromolecules are hydrolyzed
-only in animal cells
golgi apparatus -organelle active in synthesis, modifications, sorting and secretion of cell products
ribosomes -complexes that make proteins; free in cytosol or bound to rough ER or nuclear envelope
plasma membrane -membrane enclosing the cell; made of phospholipids
nucleus -membrane containing the genetic material of the cell
nuclear envelope -double membrane enclosing the nucleus, perforated by pores, continuous with the ER
nucleolus -nonmembranous structure involved in production of ribosomes; a nucleus has one or more nucleoli
chromatin -material consisting of DNA and proteins; visible in a dividing cell as individual condensed chromosomes
endoplasmic reticulum -network of membranous sacs and tubes active in membrane synthesis and other synthetic and metabolic processes; has rough (ribosome studded) and smooth regions
microtubules -maintains cell shape (compression resistant "girders")
-cell motility (as in cilia or flagella)
-chromosome mvmt. in cell division
-organelle mvmt.
microfilaments -two intertwined strands of action, each a polymer of actin subunits
-maintenacne of cell shape (tension bearing elements)
-muscle contraction
-cytoplasmic streaming
-cell motility (as in pseudopodia)
-cell division (cleavage furrow formation)
intermediate filaments -fibrous proteins supercoiled into thicker cables
-i.e. keratin
-maintenance of cell shape (tension bearing elements)
-anchorage of nucleus and certain other organelles
van der Waals interactions -ever-changing regions of positive and negative charge that enable all atoms and molecules to stick to one another
-weak and occur only when atoms are close together

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