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128 terms

bio chp 1-3 review

STUDY
PLAY
Biology
Scientific Study of Life
Properties of Life
Order, Adaptation, Response to Environment, Regulations, Energy Process, Reproduction
Study of Life
Microscopic (Cells) to Global (Planet)
Hierarchy of Biological Organization: BECPOOTCOM
Biosphere, Ecosystem, Community, Population, Organisms, Organs/Organ Systems, Tissue, Cell, Organelles, Molecules
Ecosystem
- Each organism interacts with its environment (living and non living);
- Both organisms and environment are affected by interactions between each other
- The nonliving help the living develop
Dynamics of Ecosystem
1. Cycling of Nutrients (materials from plants go back to the soil.
2. The Flow of Energy (Sunlight -> Producers -> Consumers)
Energy Conversion
- Moving, growing, reproducing, and other activities of life require organisms to perform work, depending on an energy source.
- include transfer of energy between organisms and their surroundings
- Energy flows through an ecosystem: entering as light and exiting as heat.
Cells
- The Lowest level of organization that can perform all activities required for life
- They contain chromosomes made partly of DNA
- all are enclosed by membrane and use DNA as genetic Info.
DNA
a substance of genes that programs cell's production of proteins and transmits info from parent to offspring.
2 Main forms of Cells
- Eukaryotic Cells: Subdivided by internal membranes into various membrane enclosed organelles
- Prokaryotic Cells: lack membrane enclosed organelles that are found in eukaryotic cells
System
combination of components that form a more complex organization (Ex. Cells, Organs, Organisms)
The Emergent Properties of Systems
- due to the arrangement and interactions of parts as complexity increases; as time moves on, every organism becomes more complex. (the hierarchy of biological order)
Reductionism
define: reducing complex systems to simpler components making it easier to study. (Animalia -> Reptile -> Snake -> Water Moccasin.
Systems Biology
- GOAL: seeks to create models of behavior of whole biological systems.
- these models help scientists predict how a change in part of a system might affect the whole system
Three (3) Key Research Developments
- High-Throughput Technology: help scientists understand huge amounts of data quickly
- Bioinformatics: Software that helps scientists understand biological products; Ex. Math Models
- Interdisciplinary Research Team: A Team of members from different fields necessary to understand the whole research; Ex. engineers, medical scientists, chemists, physicists, biologists all working together.
Feedback Regulation in Biological Systems
- a supply-and-demand economy applies to some of the dynamics of biological systems.
- The output(product) of a process regulates that very process.
Negative Feedback
- the most common
- accumulation of an end product of a process slows that process that produces that product.
-Ex. Cell -> Creates ATP -> excessive accumulation of ATP-> ATP "feedback" and holds back an enzyme at the beginning of the pathway -> slows ATP production
Positive Feedback
- An end product speeds up its production.
- Ex. Blood Vessel damage cause platelets to gather -> chemical released by the platelets attracts more platelets -> sealing the vessel with a clot.
Cladogram
a diagram that is based on patterns of shared, derived traits and that shows the evolutionary relationships between groups of organisms/species
Taxonomy
- Brainchild of Carrolus Linnaeus
- branch of biology that names and classifies species according to a system of broader and broader groups
Classifying Life
Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species
Bacteria
- Prokaryotic, Unicellular, Micro
- one of three domains of life
Archaea
- Prokaryotic, Unicellular, Micro
- one of three domains of life
Eukarya
- most complex of the three domains of life
- eukaryotic, single to multicellular, small to large
- includes various Protist Kingdoms and the Kingdoms Plantae, Fungi, and Animalia.
Evolution
accounts for life's unity and diversity
Charles Darwin
- In 1859, he published On the Origin of Species by Natural Selection.
- proposed that natural selection could enable ancestral species to 'split' into two or more species resulting in the "tree of life"
Main Points of On the Origins of Species by Natural Selection
- Descent with modificiations (Overtime organisms change)
- Natural Selection (Survival of the Fittest; adapt the best to change)
Natural Selection
Darwin proposed that it was the mechanism for evolutionary adaptation of population to their environment
The Tree of Life
- Many organisms are related
- similar anatomical features adapted for way of life Ex. Bats wings look like peoples hands
- kinship connect lifes unity in diversity to Darwins concept "descent with modification"
- natural selection enable ancetral species to 'split'
- each species on twig of branching tree of life extends back in time to more remote ancetral species; long evolutionary history
Biology's 2 processes of Scientific Inquiry
1. Discovery Science
2. Hypothesis-Based Science
Discovery Science
describes natural structures and processes as accurately as possible through careful observation an analysis of data
Types of Data
- Recorded Observations
- Quantitative: measurements and numbers (more preferred)
-Qualitative: recorded descriptions; colors or features
Inductive Reasoning
Generalization based on large number of specific observations. Ex. The sun always rises in the east.
Deduction Reasoning
- The "If...then" logic
- the logic flows from the general to the specific
Scientific Hypothesis
- if correct, we can expect a particular outcome
- hust have 2 qualities:
* must be testable
* must be falsifiable
Myth of Scientific Method
its an idealized form of experimenting.
Scientific Theory
-Broad in Scope
- Generates new hypotheses
- is supported by a large body of evidence
Model Building in Science
Models of ideas, structures and processes help us understand scientific phenomena and make predictions.
Culture of Science
-Social Activity: biologists, physicist, chemists work together
- COMPETITIVE
Technology
Applies scientific knowledge for some specific purpose
underlying themes
provide a framework for understanding biology
Matter
- anything that takes up space and has mass
- consist of chemical elements in pure form and in combinations called compounds
elements
substances taht can't be broken down to other substance by chemical reactions
compound
substance of two or more elements combined in a fixed ratio and has characteristics differenct from its elements
# of essential elements
92
Carbon, Hydrogen, Oxygen, and Nitrogen
Make up 96% of living matter
Most abundant Element in Earth's Crust
Silicon and Oxygen
Effects of essential elements deficiencies
- nitrogen deficiency: shorter crops
- iodine deficiency: Goiter
Trace Elements
required by an organism in only minute qualities
Element Properties
- Depend on structure of atoms
- each has a certain kind of atom defferent than other elements
Atom
smallest unit of matter that still retains properties of an element
Subatomic Particles
- smaller parts of atoms
- Neutrons: No Charge
- Protons: Positively Charged
- Electrons: Negatively Charged
Atomic Nucleus
Where protons and neutrons are found
Electron Cloud
Where electrons are found surrounding the nucleus in a cloud.
Atomic Number
- Number of Protons, unique to each element
Atomic Mass
- Number of Protons + Number of Neutrons
Isotopes of an Element
- differ in number of neutrons in the atomic nucleus
- have the same number of protons
Radioactive Isotopes
- Spontaneously give off particles of energy
- can be used in biology to date fossils and trace atoms through metabolism
Atoms Electrons Vary...
In the amount of energy and potential energy they possess
Energy
The capacity to cause change
Potential Energy
Energy that matter possesses because of its location or structure.
Energy Levels
Represented by electron shells
- the closer to the nucleus, the less energy the electron has.
Chemical Behavior of Atoms
based on its electron configuration and distribution
Valence Electrons
- Electrons in the outermost electron shell
- determines the chemical behavior of an atom
Valence Shell
Outermost electron shell
Orbital
3 Dimensional space where an electon is found 90% of the time
Electron Shell
consists of a special number of orbitals
Formation and function of molecules
depend on chemical bonding between atoms
Covalent Bond
- sharing of a pair of valence electrons
- the strongest of all the bonds Ex. Diamond(10)
Molecule
two or more atoms held together by covalent bonds
single bond
sharing of one pair of valence electrons
Double Bond
sharing of two pairs of valence electrons
electronegativity
- the attraction of a particular kind of atom fo the electrons in a covalent bond.
- more electronegativity in an atom, more strongly it pulls shared electrons toward itself.
nonpolar covalent bond
atoms have similar electronegativity, and they share the electron equally
Polar Covalent bond
atoms have differeing electronegativity and share electrons unequally.
Ions
- Electrons transfered between two atoms
- atoms with more or fewer electrons than usual are charged atoms
- sometimes, atoms slip electrons away from their bonding partners
Anion
Negatively charged ions
Cations
Positively charged ions
Ionic Bonds
attraction between anions and cations
Ionic Compounds
- Called salts which may form crystals
hydrogen Bonds
formed when a hydrogen atom covalently bonded to one electronegative atom is also attracted to another electronegative atom
Van der Waals Interaction
- occurs when transiently postive and negative regions of molecules attract each other
- weak bonding in a gecko's feet
Weak Chemical Bonds
- reinforce the shapes of large molecules and help molecules adhere to each other
- Van der Waal, Hydrogen Bonds, Ionic Bonds
Precise Shapes of Molecules
- important to its function in the living cell
- found by position of atoms' valence orbitals
Molecular Shape
find how biological molecules recognize and respond to one another with specificity.
Chemical Reaction
- making and breaking of chemical bonds that leads to changes in the composition of matter
- convert reactants to products
Ex. Photosynthesis
Water
- required by all living organisms
- most cells are surrounded by it and are 70 - 95% water.
Determination of organisms in environment
Amount of water there
Three Phases
Water is the only common substance to exist in three phases
Water Molecules
Polar Molecules = Polar Covalent Bonds
- opposite ends have opposite charges
- polarity allows them to form bonds with each other.
Four Water properties that facilitate an environment for life
1) Cohesive Behavior
2) Moderation of Temperature
3) Expansion upon freezing
4) versatility as a Solvent
Cohesion Behavior
- collectively, hydrogen bonds hold water molecules together
- arrangement of molecules is constantly changing
- hydrogen bonds last only a trillionth of a second by they constantly form, break, and reform.
Adhesion
- Counters gravity
- the attraction of different substances
Surface Tension
measure of how hard it is to break the surface of a liquid.
Moderation of Temperature
- water absorbs heat from warmer air and releases stored heat to cooler air
- H2O can perform this with only a slight change in its own temperture.
Kinetic Energy
energy of motion
Heat
- the amount of the total amount of kinetic energy due to molecular motion
Temperature
measures the intensity of heat due to the average kinetic energy of molecules
Faster Movement of atoms and Molecules...
- more kinetic energy
- higher temperatures
Change of State of Water
- Boils at 100 Degrees Celcius
- Freezes at 0 Degrees Celcius
Calorie
Amount of energy needed to raise or lower the temperature of 1 gram of water by 1 degree C
Kilocalorie
- amount of energy needed to raise 1 kg of water by 1Degree C
- measurements in food
1Joule
0.239 cal
1 Calorie
4.184 Joules
Specific Heat
must be absorbed or lost for 1 g of that substance to change its temperature by 1 degree C
Water Specific Heat
- its HIGH specific heat lessens it changes to within limits that permit life
- 1 cal/g/Degree C (HIGH)
- Bonds broken
- bonds formed
- heat absorbed
- heat released
heat of vaporization
- the amount of heat a liquid must absorb for 1 g to be converted to gas
- molecules move fast enough to depart and enter the air as a gas
Evaporative Cooling
- as a liquid evaporates, the surface cools
- H20 -> Gas = 580 cal (double that amount is needed to evaporate alcohol)
- helps stabilize the temp. in organisms and bodies of water
Ice Floating
- hydrogen bonds in ice are more 'ordered' making ice less dense.
- if it sank, bodies of water would freeze solid and life would be impossible on earth
- contributes to fitness of environment
Water Freezing
- molecules slow too much to break hydrogen bonds
- become locked in crystalline lattice about 10% than surrounding liquid
Solution
liquid that's a homogeneous mixture of substances
solvent
dissolving agent of a solution
- water is a versatile solvent b/c polarity
- it readily forms H Bonds
solute
substance dissolved
aqueous solution
water is the solvent
Hydration Shell
- ionic compounds dissolve in water and each ion is surrounded by a sphere of H20 molecules
dissolving of ionic compounds
-NaCl -> both ions are exposed to H20
- oxygen has negative charge and clings to the sodium cations; hydrogen has positive charge and clings to Cl anion
hydrophilic substance
substance that has an affinity for water
hydrophobic Substance
substance that does NOT have an affinity for H20
Colloids
- Stable suspension of articles in liquid
- does'nt dissolve and remain in suspended in aqueous solution.
- Ex. oil, pollutions, whip cream
Biochemistry
Wet Chemistry
Dissociation of Water Molecules
- leads to more acidic or more basic conditions
- H atom leaves its electron behind and is transferred as a proton or H ion (H+)
- The molecule w/ the extra proton is now a hydronium ion (H30+)
- The molecule that lost the proton is now a hydroxide ion (H+)
- statistically rare, yet has great effects on organisms
pH
potential hydrogen
- ability to attract H+ ions
- scale describes how acidic or basic a solution is
- determined by the relative concentration of H+.
Effects of change in pH
- concentrations of H+ and OH- are equal in pure water
- adding certain solutes (acids & bases) modifies concentration of H+ and OH-
Acid
any substance that increases the H+ concentration of a solution (molecules with Hydrogen break down)
- solutions with pH value < 7
Base
any substance that reduces the H+ concentration of a solution
- solutions with pH value > 7
pH levels of Substances
- most biological fluids : 6 to 8
- most living cells : 7
Buffers
- substances that minimize change in concentration of H+ and OH- in a solution
- an acid-base pair that reversibly combines with H+